3D-HM: The 3D Hydrophobic Moment Vector Calculator

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Please cite:

• Article to this work:
  Reißer, S., E. Strandberg, T. Steinbrecher, A.S. Ulrich. 2014. 3D Hydrophobic Moment Vectors as a Tool to Characterize the Surface Polarity of Amphiphilic Peptides. Biophysical Journal 106, 2385-2394 (2014). DOI: 10.1016/bpj.2014.04.020
• PDB2PQR:
  Dolinsky, T.J., J.E. Nielsen, J.A. McCammon, N.A. Baker. 2004. PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Research 32: W665-W667
• APBS:
  Baker, N. A., D. Sept, S. Joseph, M.J. Holst, and J. A. McCammon. 2001. Electrostatics of nanosystems: application to microtubules and the ribosome. Proc. Natl. Acad. Sci. U. S. A. 98: 10037-41.
• NanoShaper:
  Decherchi, S., and W. Rocchia. 2013. A general and robust ray-casting-based algorithm for triangulating surfaces at the nanoscale. PLoS One 8(4): e59744.

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